BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017B10LP1|AL427121
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig744 1243 0.0
3x_Contig582 394 e-109
>3x_Contig744
Length = 2812
Score = 1243 bits (621), Expect = 0.0
Identities = 643/657 (97%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 220 gtgtagtaacacactttaccacataccattagtgatgactgaagttgggtgacatttcac 279
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtgtagtaacacactt-accacataccattagtgatgactgaagttgggtgacatttcac 65
Query: 280 cttctaatcaaactctaagattaacctgcttttatcgtatgagtgatattcatattccgc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cttctaatcaaactctaagattaacctgcttttatcgtatgagtgatattcatattccgc 125
Query: 340 agccggtacttgattggttgtttaaggtattgcagcccgtatgtatagagggagactatc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agccggtacttgattggttgtttaaggtattgcagcccgtatgtatagagggagactatc 185
Query: 400 aaaattgagttatggctcttggtcatcattacaaagattctggacaatttactaactagc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aaaattgagttatggctcttggtcatcattacaaagattctggacaatttactaactagc 245
Query: 460 tattacaatccgatagtgattgcatcbtaaatagacttattctgatcccaggagtacgtt 519
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 246 tattacaatccgatagtgattgcatcctaaatagacttattctgatcccaggagtacgtt 305
Query: 520 ccatgatgtcgtacaagtgctagcatcttttcagttgagacctcgaactcgagttttcac 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccatgatgtcgtacaagtgctagcatcttttcagttgagacctcgaactcgagttttcac 365
Query: 580 ctttccagatggwtcatctgcactcctattgtcattatacggaaccttagacggtgttcc 639
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctttccagatggatcatctgcactcctattgtcattatacggaaccttagacggtgttcc 425
Query: 640 aataattgtatggwtcccaaaacaatatccakttacaktaccgtatatttacttggattt 699
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 426 aataattgtatggatcccaaaacaatatccagttacagtaccgtatatttacttggattt 485
Query: 700 aaactccttgactggtgatttgaagatacaggtgaatcaatatcttgwtataaktkkaca 759
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 486 aaactccttgactggtgatttgaagatacaggtgaatcaatatcttgatataagtggaca 545
Query: 760 attcttcttaccaatatttggagcgtggagtggccagccagtwagtttattacagkcaat 819
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 546 attcttcttaccaatatttggagcgtggagtggccagccaggaagtttattacaggcaat 605
Query: 820 acaccagttattagaaatatggcataactattatccattgtttgatkcgacttccat 876
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 606 acaccagttattagaaatatggcataactattatccattgtttgatgcgacttccat 662
>3x_Contig582
Length = 2827
Score = 394 bits (197), Expect = e-109
Identities = 212/215 (98%), Gaps = 2/215 (0%)
Strand = Plus / Plus
Query: 1 gatcaattaaaatcagcttaatgtcatacagcactcagactcatggagtatagctctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 gatcaattaaaatcagcttaatgtcatacagcactcagactcatggagtatagctctccc 2673
Query: 61 ttttactttgatttaacactctataacttcbttaaattcattaattctgatttcagtttt 120
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 2674 ttttactttgatttaacactctataacttccttaaattcattaattc-gatttcagtttt 2732
Query: 121 atttcaatcttctcatccaaatctcaagtacgatagaaattattgttacccggtcattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 atttcaatcttctcatccaaatctcaagtacgatagaaattattgttacccggtcattca 2792
Query: 181 atactataccctttc-cctgcatcttagcgaatca 214
||||||||||||||| |||||||||||||||||||
Sbjct: 2793 atactataccctttcncctgcatcttagcgaatca 2827
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5663
Number of Sequences: 1807
Number of extensions: 5663
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)